Capt. Art,
I doubt that the sealant around your windows is butyl, unless it is covered by some other material. Reason being is that a butyl sealant, whether a tape or liquid, is inherently tacky and would pick up a tremendous amount of dirt. Plus, it wouldn't have the strength to hold the windows in place.
I have seen rubber gaskets do what you're describing. If it's the gasket leaching carbon black, wipe the surface with lighter fluid (naphtha) and then coat the rubber with a vinyl/rubber protectant.
Bob